PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_52D5D13A1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 197aa    MW: 22630.5 Da    PI: 4.7508
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_52D5D13A1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC148.61.3e-46191221101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw++q   ie+atd+knh lP +ri+ki+kadedv+misaeaP+l++kace+f le+t+rsw+ a+e krr l++sdiaaav+r
  Traes_7DL_52D5D13A1.1  19 QLQQFWAEQrseIEQATDIKNHPLPPTRIRKIMKADEDVRMISAEAPALFAKACEMFTLEMTMRSWMVAKEDKRRILQRSDIAAAVAR 106
                            89******99999*************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            t i+dfl+d    +e+
  Traes_7DL_52D5D13A1.1 107 TGIYDFLLDLFTSEET 122
                            *********9988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-277113IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-3033104IPR009072Histone-fold
PfamPF008086.2E-1842104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MYEQSQEYQL QLQQQCQRQL QQFWAEQRSE IEQATDIKNH PLPPTRIRKI MKADEDVRMI  60
SAEAPALFAK ACEMFTLEMT MRSWMVAKED KRRILQRSDI AAAVARTGIY DFLLDLFTSE  120
ETKQGFLLPR AGQGQQPMGA QAGAYPYYYA PEQQVAGASM VYGGPSTYVW QEPQVQEQGH  180
PSSTYVWQEP PQQQEGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C7e-321211611116HapE
4g92_C7e-321211611116HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966318.17e-63PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9ZVL33e-50NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLW5HZK31e-144W5HZK3_WHEAT; Uncharacterized protein
STRINGMLOC_53118.12e-62(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-46nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]